2OAI

The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52910.05M CaCl2, 0.1M Bis-Tris pH 6.5, 30% PEG MME550, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.6353.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.905α = 90
b = 87.905β = 90
c = 87.905γ = 90
Symmetry
Space GroupI 2 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-12-10MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97924, 0.97938, 0.98706APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.831.199.30.04313.18.61056710567-330.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8492.70.5492.14

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.831.08100641006450399.370.175830.175830.17460.19977RANDOM52.966
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.333
r_dihedral_angle_4_deg19.772
r_dihedral_angle_3_deg14.284
r_dihedral_angle_1_deg6.903
r_scangle_it4.017
r_scbond_it2.64
r_mcangle_it1.808
r_mcbond_it1.638
r_angle_refined_deg1.63
r_symmetry_vdw_refined0.333
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.333
r_dihedral_angle_4_deg19.772
r_dihedral_angle_3_deg14.284
r_dihedral_angle_1_deg6.903
r_scangle_it4.017
r_scbond_it2.64
r_mcangle_it1.808
r_mcbond_it1.638
r_angle_refined_deg1.63
r_symmetry_vdw_refined0.333
r_nbtor_refined0.308
r_nbd_refined0.215
r_symmetry_metal_ion_refined0.173
r_chiral_restr0.134
r_xyhbond_nbd_refined0.13
r_symmetry_hbond_refined0.121
r_metal_ion_refined0.038
r_bond_refined_d0.015
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms644
Nucleic Acid Atoms
Solvent Atoms86
Heterogen Atoms10

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing
SHELXDphasing
SHELXEmodel building
MLPHAREphasing
DMphasing
SOLVEphasing
RESOLVEphasing
ARP/wARPmodel building
CCP4phasing
Omodel building
Cootmodel building