X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5hanging drop with 1:1 addition of protien and mothor liquor, 25% polyethylene glycol monomethyl ether 2000, 100 mM sodium cacodylate, 100 mM MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
3.4864.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.428α = 90
b = 92.428β = 90
c = 78.235γ = 90
Symmetry
Space GroupP 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 210MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.1ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.392.4598.30.0730.0736.63.328901
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.4293.80.5950.5951.22.84004

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.392.4528884147298.210.1990.1970.238RANDOM37.666
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.04-1.042.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.3
r_dihedral_angle_3_deg18.896
r_dihedral_angle_4_deg18.108
r_dihedral_angle_1_deg6.136
r_mcangle_it1.843
r_angle_refined_deg1.647
r_scangle_it1.562
r_mcbond_it1.216
r_scbond_it1.175
r_symmetry_hbond_refined0.366
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.3
r_dihedral_angle_3_deg18.896
r_dihedral_angle_4_deg18.108
r_dihedral_angle_1_deg6.136
r_mcangle_it1.843
r_angle_refined_deg1.647
r_scangle_it1.562
r_mcbond_it1.216
r_scbond_it1.175
r_symmetry_hbond_refined0.366
r_nbtor_refined0.305
r_nbd_refined0.208
r_xyhbond_nbd_refined0.186
r_symmetry_vdw_refined0.172
r_chiral_restr0.118
r_bond_refined_d0.016
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3356
Nucleic Acid Atoms
Solvent Atoms96
Heterogen Atoms60

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
CCP4data scaling