X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529810%-15% PEG 6000/8000, 0.2-0.5 M calcium acetate, 0.1 M cacodylic acid, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.4850.44

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.371α = 90
b = 98.74β = 90
c = 100.226γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-08-31MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X26CNSLSX26C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
135099.6172141714522

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT350172141714591399.620.2210.2210.2170.29RANDOM42.72
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.18-3.930.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.627
r_dihedral_angle_3_deg20.982
r_dihedral_angle_4_deg17.363
r_dihedral_angle_1_deg7.958
r_scangle_it1.687
r_angle_refined_deg1.5
r_scbond_it1.028
r_angle_other_deg0.81
r_mcangle_it0.774
r_mcbond_it0.636
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.627
r_dihedral_angle_3_deg20.982
r_dihedral_angle_4_deg17.363
r_dihedral_angle_1_deg7.958
r_scangle_it1.687
r_angle_refined_deg1.5
r_scbond_it1.028
r_angle_other_deg0.81
r_mcangle_it0.774
r_mcbond_it0.636
r_symmetry_hbond_refined0.275
r_nbd_refined0.233
r_symmetry_vdw_other0.216
r_xyhbond_nbd_refined0.195
r_nbtor_refined0.188
r_nbd_other0.187
r_symmetry_vdw_refined0.103
r_nbtor_other0.09
r_xyhbond_nbd_other0.079
r_mcbond_other0.076
r_chiral_restr0.075
r_bond_refined_d0.014
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6081
Nucleic Acid Atoms
Solvent Atoms2
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction