X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529810%-15% PEG 6000/8000, 0.2-0.5 M calcium acetate, 0.1 M cacodylic acid, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.0459.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.428α = 90
b = 98.186β = 90
c = 161.826γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-04-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X26CNSLSX26C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.55098.99357273536622

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.549.393572735366188498.990.2280.2280.2250.293RANDOM48.38
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
10.06-7.32-2.74
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it6.748
r_scbond_it4.943
r_mcangle_it4.702
r_angle_other_deg3.571
r_mcbond_it2.959
r_angle_refined_deg1.496
r_dihedral_angle_1_deg1.235
r_nbd_other0.311
r_symmetry_vdw_other0.301
r_nbd_refined0.239
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it6.748
r_scbond_it4.943
r_mcangle_it4.702
r_angle_other_deg3.571
r_mcbond_it2.959
r_angle_refined_deg1.496
r_dihedral_angle_1_deg1.235
r_nbd_other0.311
r_symmetry_vdw_other0.301
r_nbd_refined0.239
r_symmetry_vdw_refined0.215
r_symmetry_hbond_refined0.202
r_xyhbond_nbd_refined0.161
r_nbtor_other0.114
r_chiral_restr0.1
r_bond_refined_d0.007
r_gen_planes_other0.005
r_gen_planes_refined0.004
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6072
Nucleic Acid Atoms
Solvent Atoms239
Heterogen Atoms60

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction