X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529810%-15% PEG 6000/8000, 0.2-0.5 M calcium acetate, 0.1 M cacodylic acid, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.4249.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.205α = 90
b = 106.644β = 91.57
c = 99.691γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-10-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X26CNSLSX26C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.45096.9624146048022

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.4506241460480315796.920.1930.1930.190.261RANDOM36.556
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.2-0.871.45-0.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.779
r_scangle_it4.524
r_scbond_it2.56
r_mcangle_it1.842
r_angle_refined_deg1.68
r_mcbond_it0.972
r_angle_other_deg0.913
r_symmetry_vdw_other0.298
r_nbd_other0.249
r_nbd_refined0.223
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.779
r_scangle_it4.524
r_scbond_it2.56
r_mcangle_it1.842
r_angle_refined_deg1.68
r_mcbond_it0.972
r_angle_other_deg0.913
r_symmetry_vdw_other0.298
r_nbd_other0.249
r_nbd_refined0.223
r_xyhbond_nbd_refined0.217
r_symmetry_vdw_refined0.212
r_symmetry_hbond_refined0.174
r_chiral_restr0.096
r_nbtor_other0.092
r_bond_refined_d0.017
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12152
Nucleic Acid Atoms
Solvent Atoms841
Heterogen Atoms84

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction