2MXA
Solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC/HMQC | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
2 | 2D 1H-13C HSQC/HMQC | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
3 | 3D HNCACB | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
4 | 3D CBCA(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
5 | 3D 1H-15N NOESY | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
6 | 3D HBHA(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
7 | 3D H(CCO)NH | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
8 | 3D C(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
9 | 3D HNCO | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
10 | 3D HCCH-TOCSY | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
11 | 3D HCCH-COSY | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
12 | 3D 1H-13C NOESY aliphatic | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
13 | 3D 1H-13C NOESY aromatic | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 950 |
2 | Bruker | DRX | 500 |
3 | Bruker | DRX | 600 |
4 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | including water refinement | CcpNmr Analysis |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 40 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | spectrum analysis | CcpNmr Analysis | 2.2 | CCPN |
2 | spectrum display | NMRDraw | any | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
3 | spectrum processing | NMRPipe | any | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
4 | structure solution | NMRPipe | any | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
5 | spectrum processing | NMRPipe | any | Linge, O'Donoghue and Nilges |
6 | structure solution | NMRPipe | any | Linge, O'Donoghue and Nilges |
7 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
8 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
9 | structure solution | TALOS | Cornilescu, Delaglio and Bax | |
10 | data analysis | TALOS | Linge, O'Donoghue and Nilges | |
11 | structure solution | TALOS | Linge, O'Donoghue and Nilges | |
12 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
13 | structure solution | TALOS | Cornilescu, Delaglio and Bax | |
14 | data analysis | TALOS | Linge, O'Donoghue and Nilges | |
15 | structure solution | TALOS | Linge, O'Donoghue and Nilges | |
16 | refinement | ARIA |