2MP1
Solution structure of the human chemokine CCL19
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | .515 mM [U-100% 13C; U-100% 15N] Human Chemokine CCL19, 10 % [U-99% 2H] D2O, 25 mM [U-100% 2H] dueterated MES, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6 mM | 5.6 | AMBIENT | 298 | |
2 | 3D_13C-separated_NOESY | .515 mM [U-100% 13C; U-100% 15N] Human Chemokine CCL19, 10 % [U-99% 2H] D2O, 25 mM [U-100% 2H] dueterated MES, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6 mM | 5.6 | AMBIENT | 298 | |
3 | 3D_13C-separated_NOESY (AROMATIC) | .515 mM [U-100% 13C; U-100% 15N] Human Chemokine CCL19, 10 % [U-99% 2H] D2O, 25 mM [U-100% 2H] dueterated MES, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6 mM | 5.6 | AMBIENT | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
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Method | Details | Software |
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT, AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT | CCL19 STRUCTURES ARE BASED ON A TOTAL OF 2481 NOE CONSTRAINTS ( 1559 INTRA, 398 SEQUENTIAL, 171 MEDIUM, 353 LONG RANGE) AND 85 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS., CCL19 STRUCTURES ARE BASED ON A TOTAL OF 2481 NOE CONSTRAINTS ( 1559 INTRA, 398 SEQUENTIAL, 171 MEDIUM, 353 LONG RANGE) AND 85 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. | Xplor-NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Xplor-NIH | 2.9.3 | SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. |
2 | collection | TopSpin | 3.1 | Bruker |
3 | processing | NMRPipe | 2007 | Delagio,F. et al. |
4 | data analysis | XEASY | 1.3 | Eccles, C., Guntert, P., Billeter, M., Wuthrich, K. |
5 | data analysis | GARANT | 2.1 | C. Bartels |
6 | data analysis | CARA | 1.8.4 | Keller, R. |
7 | refinement | CYANA | 3.1 | Guntert, P. |