2MND

Recognition complex of DNA d(CGACGCGTCG)2 with thiazotropsin B

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H TOCSY	2 mM Thiazotropsin B, 2 mM 5'-D(*CP*GP*AP*CP*GP*CP*GP*TP*CP*G)-3'	90% H2O/10% D2O	0.05	7.4	ambient	298
2	2D 1H-1H COSY	2 mM Thiazotropsin B, 2 mM 5'-D(*CP*GP*AP*CP*GP*CP*GP*TP*CP*G)-3'	90% H2O/10% D2O	0.05	7.4	ambient	298
3	2D 1H-1H NOESY	2 mM Thiazotropsin B, 2 mM 5'-D(*CP*GP*AP*CP*GP*CP*GP*TP*CP*G)-3'	90% H2O/10% D2O	0.05	7.4	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
molecular dynamics		TopSpin

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	1
Conformers Submitted Total Number	1
Representative Model	1 (minimized average structure)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin	2.1	Bruker Biospin
2	processing	TopSpin	2.1	Bruker Biospin
3	chemical shift assignment	Sparky		Goddard
4	data analysis	Sparky		Goddard
5	peak picking	Sparky		Goddard
6	geometry optimization	SYBYL		Tripos
7	geometry optimization	Amber		Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
8	refinement	Amber		Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
9	structure solution	Amber		Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
10	structure solution	MARDIGRAS		Tripos