SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide90% H2O/10% D2O7.0ambient298
23D HNCO1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide90% H2O/10% D2O7.0ambient298
33D HN(CO)CA1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide90% H2O/10% D2O7.0ambient298
43D CBCA(CO)NH1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide90% H2O/10% D2O7.0ambient298
52D 1H-13C HSQC1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide90% H2O/10% D2O7.0ambient298
62D 1H-13C HSQC aliphatic Constant Time1 mM [U-10% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide90% H2O/10% D2O7.0ambient298
73D HBHA(CO)NH1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide90% H2O/10% D2O7.0ambient298
83D HNCACB1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide90% H2O/10% D2O7.0ambient298
92D 1H-15N HSQC1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide100% D2O7.0ambient298
102D 1H-13C HSQC aliphatic1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide90% H2O/10% D2O7.0ambient298
112D 1H-13C HSQC aliphatic1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide100% D2O7.0ambient298
122D 1H-13C HSQC aromatic1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide100% D2O7.0ambient298
133D HCCH-TOCSY1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide100% D2O7.0ambient298
143D HCCH-TOCSY1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide100% D2O7.0ambient298
153D 1H-15N NOESY1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide90% H2O/10% D2O7.0ambient298
163D 1H-13C NOESY aliphatic1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide100% D2O7.0ambient298
173D 1H-13C NOESY aromatic1 mM [U-100% 13C; U-100% 15N] YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide100% D2O7.0ambient298
181D 1H WATERGATE1 mM YmoB-C117S, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM TCEP, 0.2 mM EDTA, 0.1% sodium azide90% H2O/10% D2O7.0ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX800
2VarianINOVA900
3VarianINOVA800
NMR Refinement
MethodDetailsSoftware
Simulated annealing molecular dynamics, simulated annealingTopSpin
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin2.0 and 3.0Bruker Biospin
2collectionVnmrJ3.2Varian
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4processingMddNMRV. Orekhov, V. Jaravine, M. Mayzel, K. Kazimierczuk, Swedish NMR Center, University of Gothenburg
5data analysisNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6data analysisNMRViewJohnson, One Moon Scientific
7chemical shift assignmentCARA1.9.0 Beta 3(c) 2000-2010 by Rochus Keller and others
8peak pickingCARA1.9.0 Beta 3(c) 2000-2010 by Rochus Keller and others
9chemical shift assignmentUnio'10Version 2.0.22002-2011 Torsten Herrmann
10data analysisTALOS+Cornilescu, Delaglio and Bax
11structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich
12refinementCNS1.2.1Brunger, Adams, Clore, Gros, Nilges and Read
13data analysisProcheckNMRLaskowski and MacArthur
14data analysisMOLMOLKoradi, Billeter and Wuthrich
15data analysisPyMOLSchrodinger, LLC.
16refinementCYANAGuntert, Mumenthaler and Wuthrich