2MKN

Structural Characterization of Interactions between the Double-Stranded RNA-Binding Zinc Finger Protein JAZ and dsRNA

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	200-300 mM [U-95% 13C; U-95% 15N] protein	90% H2O/10% D2O	55	7.4	ambient	298
2	3D 1H-15N NOESY	200-300 mM [U-95% 13C; U-95% 15N] protein	90% H2O/10% D2O	55	7.4	ambient	298
3	3D HNCA	200-300 mM [U-95% 13C; U-95% 15N] protein	90% H2O/10% D2O	55	7.4	ambient	298
4	3D HNCO	200-300 mM [U-95% 13C; U-95% 15N] protein	90% H2O/10% D2O	55	7.4	ambient	298
5	3D HNCACB	200-300 mM [U-95% 13C; U-95% 15N] protein	90% H2O/10% D2O	55	7.4	ambient	298
6	3D 1H-15N TOCSY	200-300 mM [U-95% 13C; U-95% 15N] protein	90% H2O/10% D2O	55	7.4	ambient	298
7	3D 1H-13C NOESY	200-300 mM [U-95% 13C; U-95% 15N] protein	90% H2O/10% D2O	55	7.4	ambient	298
8	3D HCCH-COSY	200-300 mM [U-95% 13C; U-95% 15N] protein	90% H2O/10% D2O	55	7.4	ambient	298
9	3D HCCH-TOCSY	200-300 mM [U-95% 13C; U-95% 15N] protein	90% H2O/10% D2O	55	7.4	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DMX	750
2	Bruker	DRX	600
3	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing	HADDOCK MODEL OF JAZ ZINC FINGER 3 COMPLEXED WITH DSRNA.	Amber

NMR Ensemble Information
Conformer Selection Criteria
Conformers Calculated Total Number	100
Conformers Submitted Total Number	1
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	Amber		Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
2	structure solution	CYANA		Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	NMRView		Johnson, One Moon Scientific
4	geometry optimization	TALOS		Cornilescu, Delaglio and Bax
5	refinement	HADDOCK		Alexandre Bonvin