2MIC

NMR structure of p75 transmembrane domain in DPC micelles


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate95% H2O/5% D2O5.9ambient318
22D 1H-13C HSQC aliphatic1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate95% H2O/5% D2O5.9ambient318
32D 1H-13C HSQC aromatic1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate95% H2O/5% D2O5.9ambient318
43D HNCO1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate95% H2O/5% D2O5.9ambient318
53D HNCA1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate95% H2O/5% D2O5.9ambient318
63D HN(CO)CA1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate95% H2O/5% D2O5.9ambient318
73D 1H-15N NOESY1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate95% H2O/5% D2O5.9ambient318
83D 1H-15N TOCSY1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate95% H2O/5% D2O5.9ambient318
93D 1H-13C NOESY aliphatic1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate95% H2O/5% D2O5.9ambient318
103D 15N- and 13C-edited NOESY and 15N,13C-F1-filtered/F3-edited-NOESY1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate95% H2O/5% D2O5.9ambient318
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance800
2BrukerAvance600
NMR Refinement
MethodDetailsSoftware
simulated annealingTOPSPIN
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTOPSPIN3.0Bruker Biospin
2processingTOPSPIN3.0Bruker Biospin
3data analysisTOPSPIN3.0Bruker Biospin
4structure solutionCYANA3.0Guntert, Mumenthaler and Wuthrich
5chemical shift assignmentCARAKeller, R
6peak pickingCARAKeller, R
7data analysisCARAKeller, R
8angles constrains predictionTALOS-NYang Shen, and Ad Bax
9refinementCYANAGuntert, Mumenthaler and Wuthrich