2MH3
NMR structure of the basic helix-loop-helix region of the transcriptional repressor HES-1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | triple resonance assignment | 2 mM [U-99% 13C; U-99% 15N] protein, 50 mM potassium phosphate | 90% H2O/10% D2O | 50 | 6.5 | ambient | 288 | |
2 | relaxation | 2 mM [U-99% 13C; U-99% 15N] protein, 50 mM potassium phosphate | 90% H2O/10% D2O | 50 | 6.5 | ambient | 288 | |
3 | DNA titration | 2 mM [U-99% 13C; U-99% 15N] protein, 50 mM potassium phosphate | 90% H2O/10% D2O | 50 | 6.5 | ambient | 288 | |
4 | NOESY | 2 mM [U-99% 13C; U-99% 15N] protein, 50 mM potassium phosphate | 90% H2O/10% D2O | 50 | 6.5 | ambient | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
restrained molecular dynamics | CCPN_ANALYSIS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | CCPN_ANALYSIS | CCPN | |
2 | data analysis | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
3 | data analysis | TALOS+ | Cornilescu, Delaglio and Bax | |
4 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
5 | data analysis | CING | Vuister et al. | |
6 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |