2LWG

NMR Structure of the Self-Complementary 10 mer DNA Oligonucleotide 5'-GGATATATCC-3'.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY0.9 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3')100% D2O7ambient278
22D 1H-1H NOESY0.9 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3')90% H2O/10% D2O7ambient278
32D DQF-COSY0.9 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3')100% D2O7ambient278
42D 1H-1H NOESY1.2 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), 11 mg/mL Pf1 phage100% D2O7ambient278
52D 1H-13C HSQC aliphatic1.2 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), 11 mg/mL Pf1 phage100% D2O7ambient278
62D 1H-13C HSQC aromatic1.2 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), 11 mg/mL Pf1 phage100% D2O7ambient278
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance600
2BrukerAvance500
NMR Refinement
MethodDetailsSoftware
simulated annealing, molecular dynamicsAMBER
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number5000
Conformers Submitted Total Number11
Representative Model1 (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionAMBER9Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman
2refinementAMBER9Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman