2LSB

Solution-state NMR structure of the human prion protein

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.5 mM [U-100% 13C; U-100% 15N] protein	90% H2O/10% D2O	0.1	5.5	ambient	298
2	3D HNCO	1.5 mM [U-100% 13C; U-100% 15N] protein	90% H2O/10% D2O	0.1	5.5	ambient	298
3	3D HNCA	1.5 mM [U-100% 13C; U-100% 15N] protein	90% H2O/10% D2O	0.1	5.5	ambient	298
4	3D CBCA(CO)NH	1.5 mM [U-100% 13C; U-100% 15N] protein	90% H2O/10% D2O	0.1	5.5	ambient	298
5	3D HNCACB	1.5 mM [U-100% 13C; U-100% 15N] protein	90% H2O/10% D2O	0.1	5.5	ambient	298
6	3D 1H-15N NOESY	1.5 mM [U-100% 13C; U-100% 15N] protein	90% H2O/10% D2O	0.1	5.5	ambient	298
7	3D HBHA(CO)NH	1.5 mM [U-100% 13C; U-100% 15N] protein	90% H2O/10% D2O	0.1	5.5	ambient	298
8	3D HCCH-TOCSY	1.5 mM [U-100% 13C; U-100% 15N] protein	100% D2O	0.1	5.5	ambient	298
9	3D 1H-13C NOESY aliphatic	1.5 mM [U-100% 13C; U-100% 15N] protein	100% D2O	0.1	5.5	ambient	298
10	3D 1H-13C NOESY aromatic	1.5 mM [U-100% 13C; U-100% 15N] protein	100% D2O	0.1	5.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	Uniform NMR System	800

NMR Refinement
Method	Details	Software
molecular dynamics		NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	data analysis	Sparky		Goddard
3	structure solution	CYANA		Guntert, Mumenthaler and Wuthrich
4	refinement	YASARA		Krieger, Nabuurs and Spronk