2LA9
NMR structure of Pseudouridine_ASL_Tyr
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D Natural Abundance HSQC | 2.0 mM Pseudouridine_ASL_Tyr, 10 mM potassium chloride, 10 mM potassium phosphate, 0.02 mM EDTA | 90% H2O/10% D2O | 6.3 | ambient | 298 | ||
2 | 2D 1H-1H NOESY | 2.0 mM Pseudouridine_ASL_Tyr, 10 mM potassium chloride, 10 mM potassium phosphate, 0.02 mM EDTA | 90% H2O/10% D2O | 6.3 | ambient | 298 | ||
3 | 2D 31P-1H | 2.0 mM Pseudouridine_ASL_Tyr, 10 mM potassium chloride, 10 mM potassium phosphate, 0.02 mM EDTA | 90% H2O/10% D2O | 6.3 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry, simulated annealing, molecular dynamics, torsion angle dynamics | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 8 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH | 2.19 | Schwieters, Kuszewski, Tjandra and Clore |
2 | peak picking | Felix | Accelrys Software Inc. | |
3 | chemical shift assignment | Felix | Accelrys Software Inc. | |
4 | processing | Felix | Accelrys Software Inc. | |
5 | data analysis | Insight II | Accelrys Software Inc. | |
6 | collection | VNMR | Varian |