2L8W
r(CCGCUGCGG)2 UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with two hydrogen bond pairs
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 1.5 mM RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3') | 100% D2O | 0.01 | 7.2 | ambient | 313 | |
| 2 | 2D 1H-1H TOCSY | 1.5 mM RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3') | 100% D2O | 0.01 | 7.2 | ambient | 313 | |
| 3 | 2D DQF-COSY | 1.5 mM RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3') | 100% D2O | 0.01 | 7.2 | ambient | 313 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with acceptable covalent geometry |
| Conformers Calculated Total Number | 25 |
| Conformers Submitted Total Number | 1 |
| Representative Model | 1 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | geometry optimization | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 2 | refinement | Amber | 11 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm |
| 3 | collection | VnmrJ | 6.1 | Varian |
| 4 | data analysis | Sparky | 3.111 | Goddard |
