2L8R

Solution structure of human protein C6orf130 in complex with ADP-ribose


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY0.75 mM [U-100% 13C; U-100% 15N] C6orf130, 93% H2O, 7% D2O93% H2O/7% D2O2006.51 atm298
23D_13C-separated_NOESY0.75 mM [U-100% 13C; U-100% 15N] C6orf130, 93% H2O, 7% D2O93% H2O/7% D2O2006.51 atm298
33D_13C-separated_NOESY (AROMATIC)0.75 mM [U-100% 13C; U-100% 15N] C6orf130, 93% H2O, 7% D2O93% H2O/7% D2O2006.51 atm298
43D F1-13C-flitered/F3-13C-edited 1H-13C NOESY aliphatic0.75 mM [U-100% 13C; U-100% 15N] C6orf130, 93% H2O, 7% D2O93% H2O/7% D2O2006.51 atm298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE II600
NMR Refinement
MethodDetailsSoftware
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT., torsion angle dynamics, AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENTSTRUCTURES ARE BASED ON A TOTAL OF 2020 NOE CONSTRAINTS (632 INTRA, 416 SEQUENTIAL, 303 MEDIUM, 630 LONG RANGE, and 39 INTERMOLECULAR CONSTRAINTS) AND 211 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS., STRUCTURES ARE BASED ON A TOTAL OF 2020 NOE CONSTRAINTS (632 INTRA, 416 SEQUENTIAL, 303 MEDIUM, 630 LONG RANGE, and 39 INTERMOLECULAR CONSTRAINTS) AND 211 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS.Xplor-NIH
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementXplor-NIH2.9.3SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M.
2collectionTopSpin2.1Bruker
3processingNMRPipe2007Delagio,F. et al.
4data analysisXEASY1.3Eccles, C., Guntert, P., Billeter, M., Wuthrich, K.
5data analysisGARANT2.1C. Bartels
6structural calculationCYANA2.1Guntert, P.
7refinementCYANA