2L72
Solution structure and dynamics of ADF from Toxoplasma gondii (TgADF)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D 1H-15N NOESY | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM DTT; 1mM AEBSF protease inhibitor; 0.8mM [U-100% 15N] TgADF; 93% H2O/7% D2O | 93% H2O/7% D2O | 50 | 6.5 | ambient | 298 | |
| 2 | 3D 1H-13C(aliphatic) NOESY | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM DTT; 1mM AEBSF protease inhibitor; 0.8mM [U-100% 13C; U-100% 15N] TgADF; 93% H2O/7% D2O | 93% H2O/7% D2O | 50 | 6.5 | ambient | 298 | |
| 3 | 3D 1H-13C(aromatic) NOESY | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM DTT; 1mM AEBSF protease inhibitor; 0.8mM [U-100% 13C; U-100% 15N] TgADF; 100% D2O | 100% D2O | 50 | 6.5 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| 2 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| CNS Water Refinement | NMRPipe | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 2 | data analysis | CARA | 1.8.4 | Keller and Wuthrich |
| 3 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 4 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
| 5 | refinement | CNSSOLVE | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
