2L6S
Efficacy of an HIV-1 entry inhibitor targeting the GP41 fusion peptide
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.1 mM VIR-576, 20 mM [U-100% 2H] SODIUM ACETATE | 90% H2O/10% D2O | 20 SODIUM ACETATE-D3 | 2.2 | ambient | 298 | |
2 | 2D 1H-1H TOCSY | 0.1 mM VIR-576, 20 mM [U-100% 2H] SODIUM ACETATE | 90% H2O/10% D2O | 20 SODIUM ACETATE-D3 | 2.2 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 14 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.2 | Bruker Biospin |
2 | processing | XwinNMR | 3.2 | Bruker Biospin |
3 | chemical shift assignment | XEASY | Bartels et al. | |
4 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
5 | refinement | Amber | 9.0 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm |