2L6O

NMR structure of the protein YP_926445.1 from Shewanella Amazonensis


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide95% H2O/5% D2O0.1136.5ambient298
22D 1H-13C HSQC20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide95% H2O/5% D2O0.1136.5ambient298
33D 1H-15N NOESY20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide95% H2O/5% D2O0.1136.5ambient298
43D 1H-13C NOESY (ali)20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide95% H2O/5% D2O0.1136.5ambient298
53D 1H-15N NOESY (Aro)20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide95% H2O/5% D2O0.1136.5ambient298
65D APSY-HACACONH20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide95% H2O/5% D2O0.1136.5ambient298
74D APSY-HACANH20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide95% H2O/5% D2O0.1136.5ambient298
85D APSY-CBCACONH20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide95% H2O/5% D2O0.1136.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
molecular dynamicsOpalPCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number80
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANAGuntert, Mumenthaler and Wuthrich
2refinementOPALpLuginbuhl, Guntert, Billeter and Wuthrich
3collectionTopSpin2.1Bruker Biospin
4processingTopSpin2.1Bruker Biospin
5chemical shift assignmentCARAKeller and Wuthrich
6data analysisCARAKeller and Wuthrich
7peak pickingCARAKeller and Wuthrich
8chemical shift assignmentUNIOHerrmann and Wuthrich
9structure solutionUNIOHerrmann and Wuthrich
10peak pickingUNIOHerrmann and Wuthrich