2L6O
NMR structure of the protein YP_926445.1 from Shewanella Amazonensis
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide | 95% H2O/5% D2O | 0.113 | 6.5 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide | 95% H2O/5% D2O | 0.113 | 6.5 | ambient | 298 | |
3 | 3D 1H-15N NOESY | 20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide | 95% H2O/5% D2O | 0.113 | 6.5 | ambient | 298 | |
4 | 3D 1H-13C NOESY (ali) | 20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide | 95% H2O/5% D2O | 0.113 | 6.5 | ambient | 298 | |
5 | 3D 1H-15N NOESY (Aro) | 20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide | 95% H2O/5% D2O | 0.113 | 6.5 | ambient | 298 | |
6 | 5D APSY-HACACONH | 20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide | 95% H2O/5% D2O | 0.113 | 6.5 | ambient | 298 | |
7 | 4D APSY-HACANH | 20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide | 95% H2O/5% D2O | 0.113 | 6.5 | ambient | 298 | |
8 | 5D APSY-CBCACONH | 20 mM sodium phosphate, 50 mM sodium chloride, 8 mM DTT, 4.5 mM sodium azide | 95% H2O/5% D2O | 0.113 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | OpalP | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | refinement | OPALp | Luginbuhl, Guntert, Billeter and Wuthrich | |
3 | collection | TopSpin | 2.1 | Bruker Biospin |
4 | processing | TopSpin | 2.1 | Bruker Biospin |
5 | chemical shift assignment | CARA | Keller and Wuthrich | |
6 | data analysis | CARA | Keller and Wuthrich | |
7 | peak picking | CARA | Keller and Wuthrich | |
8 | chemical shift assignment | UNIO | Herrmann and Wuthrich | |
9 | structure solution | UNIO | Herrmann and Wuthrich | |
10 | peak picking | UNIO | Herrmann and Wuthrich |