2L65
HADDOCK calculated model of the complex of the resistance protein CalC and Calicheamicin-Gamma
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.5 mM [U-100% 15N] CalC | 95% H2O/5% D2O | 150mM | 7 | ambient | 303 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | THE STRUCTURE OF THE COMPLEX WAS DETERMINED WITH HADDOCK USING 26 AMBIGUOUS INTERACTION RESTRAINTS DERIVED FROM NMR CHEMICAL SHIFT PERTURBATION DATA AND MUTAGENESIS DATA. THE CHEMICAL SHIFT PERTURBATION DATA WERE OBTAINED BY ANALYSIS OF 1H-15N HSQC SPECTRA RECORDED WITH INCREASING RNA CONCENTRATIONS. | HADDOCK |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 4 |
| Representative Model | 1 (lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | Chemical Shift Perturbation |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | HADDOCK | 2.1 | Cyril Dominguez, Rolf Boelens and Alexandre M.J.J. Bonvin |
| 2 | refinement | HADDOCK | 2.1 | Cyril Dominguez, Rolf Boelens and Alexandre M.J.J. Bonvin |
