2KYZ

NMR structure of heavy metal binding protein TM0320 from Thermotoga maritima


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-15N NOESY1.5 mM [U-98% 13C; U-98% 15N] TM0320, 20 mM sodium phosphate, 50 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide. Reduced form of the protein. The absence of bound metals was checked by adding 5mM EDTA, which did not cause any significant chemical shift perturbations.95% H2O/5% D2O83.66.0AMBIENT313
23D 1H-13C(ali) NOESY1.5 mM [U-98% 13C; U-98% 15N] TM0320, 20 mM sodium phosphate, 50 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide. Reduced form of the protein. The absence of bound metals was checked by adding 5mM EDTA, which did not cause any significant chemical shift perturbations.95% H2O/5% D2O83.66.0AMBIENT313
33D 1H-13C(aro) NOESY1.5 mM [U-98% 13C; U-98% 15N] TM0320, 20 mM sodium phosphate, 50 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide. Reduced form of the protein. The absence of bound metals was checked by adding 5mM EDTA, which did not cause any significant chemical shift perturbations.95% H2O/5% D2O83.66.0AMBIENT313
44D APSY-HACANH1.5 mM [U-98% 13C; U-98% 15N] TM0320, 20 mM sodium phosphate, 50 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide. Reduced form of the protein. The absence of bound metals was checked by adding 5mM EDTA, which did not cause any significant chemical shift perturbations.95% H2O/5% D2O83.66.0AMBIENT313
55D APSY-HACACONH1.5 mM [U-98% 13C; U-98% 15N] TM0320, 20 mM sodium phosphate, 50 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide. Reduced form of the protein. The absence of bound metals was checked by adding 5mM EDTA, which did not cause any significant chemical shift perturbations.95% H2O/5% D2O83.66.0AMBIENT313
65D APSY-CBCACONH1.5 mM [U-98% 13C; U-98% 15N] TM0320, 20 mM sodium phosphate, 50 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide. Reduced form of the protein. The absence of bound metals was checked by adding 5mM EDTA, which did not cause any significant chemical shift perturbations.95% H2O/5% D2O83.66.0AMBIENT313
72D 1H-15N HSQC1.5 mM [U-98% 13C; U-98% 15N] TM0320, 20 mM sodium phosphate, 50 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide. Reduced form of the protein. The absence of bound metals was checked by adding 5mM EDTA, which did not cause any significant chemical shift perturbations.95% H2O/5% D2O83.66.0AMBIENT313
82D 1H-13C HSQC1.5 mM [U-98% 13C; U-98% 15N] TM0320, 20 mM sodium phosphate, 50 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide. Reduced form of the protein. The absence of bound metals was checked by adding 5mM EDTA, which did not cause any significant chemical shift perturbations.95% H2O/5% D2O83.66.0AMBIENT313
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerDRX700
3BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number80
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANA3.0Guntert, Mumenthaler and Wuthrich
2refinementOPALp1.2Luginbuhl, Guntert, Billeter and Wuthrich
3data analysisMOLMOL2K.1Koradi, Billeter and Wuthrich
4collectionTopSpin1.3Bruker Biospin
5processingTopSpin1.3Bruker Biospin
6structure solutionUNIO1.0.4Herrmann, T., Guntert, P., Wuthrich, K.
7peak pickingUNIO1.0.4Herrmann, T., Guntert, P., Wuthrich, K.
8chemical shift assignmentCARA1.8.4Keller, R.