2KYT

Solution structure of the H-REV107 N-terminal domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-13C; U-15N] H-REV107N-1, 30 mM sodium phosphate-2, 30 mM sodium chloride-3, 10 mM DTT-4, 90 % H2O-5, 10 % D2O-6, 0.05 w/v sodium azide-7, 0.02 w/v DSS-890% H2O/10% D2O607.0ambient atm298
22D 1H-13C HSQC1 mM [U-13C; U-15N] H-REV107N-1, 30 mM sodium phosphate-2, 30 mM sodium chloride-3, 10 mM DTT-4, 90 % H2O-5, 10 % D2O-6, 0.05 w/v sodium azide-7, 0.02 w/v DSS-890% H2O/10% D2O607.0ambient atm298
33D HNCACB1 mM [U-13C; U-15N] H-REV107N-1, 30 mM sodium phosphate-2, 30 mM sodium chloride-3, 10 mM DTT-4, 90 % H2O-5, 10 % D2O-6, 0.05 w/v sodium azide-7, 0.02 w/v DSS-890% H2O/10% D2O607.0ambient atm298
43D CBCA(CO)NH1 mM [U-13C; U-15N] H-REV107N-1, 30 mM sodium phosphate-2, 30 mM sodium chloride-3, 10 mM DTT-4, 90 % H2O-5, 10 % D2O-6, 0.05 w/v sodium azide-7, 0.02 w/v DSS-890% H2O/10% D2O607.0ambient atm298
53D HNCO1 mM [U-13C; U-15N] H-REV107N-1, 30 mM sodium phosphate-2, 30 mM sodium chloride-3, 10 mM DTT-4, 90 % H2O-5, 10 % D2O-6, 0.05 w/v sodium azide-7, 0.02 w/v DSS-890% H2O/10% D2O607.0ambient atm298
63D HCCH-TOCSY1 mM [U-13C; U-15N] H-REV107N-1, 30 mM sodium phosphate-2, 30 mM sodium chloride-3, 10 mM DTT-4, 90 % H2O-5, 10 % D2O-6, 0.05 w/v sodium azide-7, 0.02 w/v DSS-890% H2O/10% D2O607.0ambient atm298
73D HBHA(CO)NH1 mM [U-13C; U-15N] H-REV107N-1, 30 mM sodium phosphate-2, 30 mM sodium chloride-3, 10 mM DTT-4, 90 % H2O-5, 10 % D2O-6, 0.05 w/v sodium azide-7, 0.02 w/v DSS-890% H2O/10% D2O607.0ambient atm298
83D HCCH-COSY1 mM [U-13C; U-15N] H-REV107N-1, 30 mM sodium phosphate-2, 30 mM sodium chloride-3, 10 mM DTT-4, 90 % H2O-5, 10 % D2O-6, 0.05 w/v sodium azide-7, 0.02 w/v DSS-890% H2O/10% D2O607.0ambient atm298
93D HCCH-COSY1 mM [U-13C; U-15N] H-REV107N-1, 30 mM sodium phosphate-2, 30 mM sodium chloride-3, 10 mM DTT-4, 90 % H2O-5, 10 % D2O-6, 0.05 w/v sodium azide-7, 0.02 w/v DSS-890% H2O/10% D2O607.0ambient atm298
103D 1H-15N NOESY1 mM [U-13C; U-15N] H-REV107N-1, 30 mM sodium phosphate-2, 30 mM sodium chloride-3, 10 mM DTT-4, 90 % H2O-5, 10 % D2O-6, 0.05 w/v sodium azide-7, 0.02 w/v DSS-890% H2O/10% D2O607.0ambient atm298
113D 1H-13C NOESY1 mM [U-13C; U-15N] H-REV107N-1, 30 mM sodium phosphate-2, 30 mM sodium chloride-3, 10 mM DTT-4, 90 % H2O-5, 10 % D2O-6, 0.05 w/v sodium azide-7, 0.02 w/v DSS-890% H2O/10% D2O607.0ambient atm298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance500
2BrukerAvance600
3BrukerAvance800
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2.1Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2data analysisNMRView5Johnson, One Moon Scientific
3collectionxwinnmr3.5Bruker Biospin
4collectionTOPSPIN2.1Bruker Biospin
5structure analysisMolmolKoradi, Billeter and Wuthrich
6struture calculationCYANAGuntert, Mumenthaler and Wuthrich
7struture calculationAMBERCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm
8dihedral angle restraintsTALOSCornilescu, Delaglio and Bax
9structure analysisProcheckNMRLaskowski and MacArthur
10chemical shift assignmentSANEDuggan, Legge, Dyson & Wright
11refinementAMBERCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm