2KVM

Solution structure of the CBX7 chromodomain in complex with a H3K27me2 peptide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-100% 15N] CBX7 chromodomain, 0.75 mM H3K27me2 peptide, 4.3 mM sodium phosphate, 1.4 mM potassium phosphate, 5 mM DTT, 137 mM sodium chloride, 3 mM potassium chloride90% H2O/10% D2O1407.4ambient298
22D 1H-13C HSQC0.5 mM [U-100% 13C; U-100% 15N] CBX7 chromodomain, 0.75 mM H3K27me2 peptide, 4.3 mM sodium phosphate, 1.4 mM potassium phosphate, 5 mM DTT, 137 mM sodium chloride, 3 mM potassium chloride90% H2O/10% D2O1407.4ambient298
32D 1H-1H TOCSY0.5 mM H3K27me2 peptide, 4.3 mM sodium phosphate, 1.4 mM potassium phosphate, 5 mM DTT, 137 mM sodium chloride, 3 mM potassium chloride90% H2O/10% D2O1407.4ambient298
43D HNCACB0.5 mM [U-100% 13C; U-100% 15N] CBX7 chromodomain, 0.75 mM H3K27me2 peptide, 4.3 mM sodium phosphate, 1.4 mM potassium phosphate, 5 mM DTT, 137 mM sodium chloride, 3 mM potassium chloride90% H2O/10% D2O1407.4ambient298
53D HN(COCA)CB0.5 mM [U-100% 13C; U-100% 15N] CBX7 chromodomain, 0.75 mM H3K27me2 peptide, 4.3 mM sodium phosphate, 1.4 mM potassium phosphate, 5 mM DTT, 137 mM sodium chloride, 3 mM potassium chloride90% H2O/10% D2O1407.4ambient298
63D 1H-15N NOESY0.5 mM [U-100% 15N] CBX7 chromodomain, 0.75 mM H3K27me2 peptide, 4.3 mM sodium phosphate, 1.4 mM potassium phosphate, 5 mM DTT, 137 mM sodium chloride, 3 mM potassium chloride90% H2O/10% D2O1407.4ambient298
73D 1H-13C NOESY0.5 mM [U-100% 13C; U-100% 15N] CBX7 chromodomain, 0.75 mM H3K27me2 peptide, 4.3 mM sodium phosphate, 1.4 mM potassium phosphate, 5 mM DTT, 137 mM sodium chloride, 3 mM potassium chloride90% H2O/10% D2O1407.4ambient298
83D HCCH-TOCSY0.5 mM [U-100% 13C; U-100% 15N] CBX7 chromodomain, 0.75 mM H3K27me2 peptide, 4.3 mM sodium phosphate, 1.4 mM potassium phosphate, 5 mM DTT, 137 mM sodium chloride, 3 mM potassium chloride90% H2O/10% D2O1407.4ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
2BrukerAVANCE800
3BrukerDRX600
NMR Refinement
MethodDetailsSoftware
simulated annealing, torsion angle dynamicsARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentARIA2.0Linge, O'Donoghue and Nilges
2structure solutionARIA2.0Linge, O'Donoghue and Nilges
3refinementCNS1.1Brunger, Adams, Clore, Gros, Nilges and Read
4data analysisTALOSCornilescu, Delaglio and Bax
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6chemical shift assignmentNMRViewJohnson, One Moon Scientific
7peak pickingNMRViewJohnson, One Moon Scientific