2KOH

NMR structure of mouse Par3-PDZ3 in complex with VE-Cadherin C-terminus


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY1 mM [U-100% 13C; U-100% 15N] MmPar3 PDZ3-1, 2 mM MmVE-Cadherin-2, 20 mM sodium phosphate-3, 50 mM sodium chloride-4, 10 % D2O-5, 0.02 % sodium azide-6, 90% H2O, 10% D2O90% H2O/10% D2O536.0AMBIENT298
23D_13C-separated_NOESY1 mM [U-100% 13C; U-100% 15N] MmPar3 PDZ3-1, 2 mM MmVE-Cadherin-2, 20 mM sodium phosphate-3, 50 mM sodium chloride-4, 10 % D2O-5, 0.02 % sodium azide-6, 90% H2O, 10% D2O90% H2O/10% D2O536.0AMBIENT298
33D_13C-separated_NOESY (AROMATIC)1 mM [U-100% 13C; U-100% 15N] MmPar3 PDZ3-1, 2 mM MmVE-Cadherin-2, 20 mM sodium phosphate-3, 50 mM sodium chloride-4, 10 % D2O-5, 0.02 % sodium azide-6, 90% H2O, 10% D2O90% H2O/10% D2O536.0AMBIENT298
43D_15N-separated_NOESY1 mM [U-100% 13C; U-100% 15N] MmVE-Cadherin-7, 1 mM MmPar3 PDZ3-8, 20 mM sodium phosphate-9, 50 mM sodium chloride-10, 10 % D2O-11, 0.02 % sodium chloride-1290% H2O/10% D2O536.0AMBIENT298
53D_13C-separated_NOESY1 mM [U-100% 13C; U-100% 15N] MmVE-Cadherin-7, 1 mM MmPar3 PDZ3-8, 20 mM sodium phosphate-9, 50 mM sodium chloride-10, 10 % D2O-11, 0.02 % sodium chloride-1290% H2O/10% D2O536.0AMBIENT298
63D_13C-separated_NOESY (AROMATIC)1 mM [U-100% 13C; U-100% 15N] MmVE-Cadherin-7, 1 mM MmPar3 PDZ3-8, 20 mM sodium phosphate-9, 50 mM sodium chloride-10, 10 % D2O-11, 0.02 % sodium chloride-1290% H2O/10% D2O536.0AMBIENT298
73D_13C-F1-filtered_13C-F3-separated_NOESY1 mM [U-100% 13C; U-100% 15N] MmVE-Cadherin-7, 1 mM MmPar3 PDZ3-8, 20 mM sodium phosphate-9, 50 mM sodium chloride-10, 10 % D2O-11, 0.02 % sodium chloride-1290% H2O/10% D2O536.0AMBIENT298
83D_13C-F1-filtered_13C-F3-separated_NOESY1 mM [U-100% 13C; U-100% 15N] MmPar3 PDZ3-1, 2 mM MmVE-Cadherin-2, 20 mM sodium phosphate-3, 50 mM sodium chloride-4, 10 % D2O-5, 0.02 % sodium azide-6, 90% H2O, 10% D2O90% H2O/10% D2O536.0AMBIENT298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE II600
NMR Refinement
MethodDetailsSoftware
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENTSTRUCTURES ARE BASED ON A TOTAL OF 1868 NOE CONSTRAINTS ( 434 INTRA, 383 SEQUENTIAL, 254 MEDIUM, AND 797 LONG RANGE) AND 114 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS.Xplor-NIH
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementXplor-NIH2.9.3SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M.
2collectionTopSpin2.1Bruker
3processingNMRPipe2007Delagio,F. et al.
4data analysisXEASY1.3Eccles, C., Guntert, P., Billeter, M., Wuthrich, K.
5data analysisGARANT2.1C. Bartels
6structural calculationCYANA2.1Guntert, P.