2KNV
NMR dimer structure of the UBA domain of p62 (SQSTM1)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | Half-filter Noesy | 0.3 mM [U-99% 13C; U-99% 15N] UBA-1, 0.6 mM UBA-2, 50 mM potassium phosphate-3, 50 mM sodium chloride-4, 0.04 % sodium azide-5 | 90% H2O/10% D2O | 7 | ambient | 298 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | TopSpin | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | 2.1 | Bruker Biospin |
| 2 | data analysis | Ccpnmr | 1.15 | CCPN |
| 3 | structure solution | HADDOCK | 2.0 | Alexandre Bonvin |
| 4 | refinement | HADDOCK | 2.0 | Alexandre Bonvin |
