2KNU
Solution structure of the transmembrane proximal region of the hepatis C virus E1 glycoprotein
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1mM e1-2 | 80% hexafluoroisopropanol/20% H2O | 4.5 | ambient | 300 | ||
2 | 2D 1H-1H COSY | 1mM e1-2 | 80% hexafluoroisopropanol/20% H2O | 4.5 | ambient | 300 | ||
3 | 2D 1H-1H NOESY | 1mM e1-2 | 80% hexafluoroisopropanol/20% H2O | 4.5 | ambient | 300 | ||
4 | 2D 1H-1H TOCSY | 1mM e1-1 | 80% hexafluoroisopropanol/20%D2O | 4.5 | ambient | 300 | ||
5 | 2D 1H-1H COSY | 1mM e1-1 | 80% hexafluoroisopropanol/20%D2O | 4.5 | ambient | 300 | ||
6 | 2D 1H-1H NOESY | 1mM e1-1 | 80% hexafluoroisopropanol/20%D2O | 4.5 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, Kollm | |
2 | structure solution | CYANA | Guntert, Mumenthaler, Wuthrich | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax | |
4 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
5 | peak picking | NMRView | Johnson, One Moon Scientific |