2KMY

NMR Solution structures of fully oxidised cytochrome c3 from Desulfovibrio desulfuricans ATCC 27774


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D DQF-COSY1.8-2.0 mM cytochrome c3-190% H2O/10% D2O0,14.2ambient298
22D 1H-1H TOCSY1.8-2.0 mM cytochrome c3-190% H2O/10% D2O0,14.2ambient298
32D 1H-1H NOESY1.8-2.0 mM cytochrome c3-190% H2O/10% D2O0,14.2ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics, simulated annealingXwinNMR
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number600
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisXwinNMRBruker Biospin
2peak pickingXEASYBartels et al.
3chemical shift assignmentXEASYBartels et al.
4structure solutionPARADYANA(INDYANA) Turner et al.
5refinementPARADYANA(INDYANA) Turner et al.
6superimpositionMOLMOLKoradi, Billeter and Wuthrich
7visual inspectionMOLMOLKoradi, Billeter and Wuthrich
8rms and mean structure calculationsMOLMOLKoradi, Billeter and Wuthrich
9identification and classification of the consensus secondary structureProcheckNMRLaskowski and MacArthur