2KJD

Solution structure of extended PDZ2 domain from NHERF1 (150-270)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-590% H2O/10% D2O0.1507.5ambient303
22D 1H-13C HSQC550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-590% H2O/10% D2O0.1507.5ambient303
33D HNCACB550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-590% H2O/10% D2O0.1507.5ambient303
43D HCCH-TOCSY550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-590% H2O/10% D2O0.1507.5ambient303
53D H(CCO)NH550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-590% H2O/10% D2O0.1507.5ambient303
63D 1H-15N NOESY550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-590% H2O/10% D2O0.1507.5ambient303
73D 1H-13C NOESY550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-590% H2O/10% D2O0.1507.5ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE900
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number500
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANA1.3Guntert, Mumenthaler and Wuthrich
2refinementARIA2.2Linge, O'Donoghue and Nilges
3data analysisCARA1.5Keller and Wuthrich
4collectionTopSpin2.1Bruker Biospin
5processingTopSpin2.1Bruker Biospin
6dihedral angle calculationTALOSCornilescu, Delaglio and Bax