2KGT
Solution structure of SH3 domain of PTK6
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCACB | 0.2mM [U-99% 13C; U-99% 15N] SH domain-2 | 90% H2O/10% D2O | 100 | 7 | AMBIENT | 298 | |
2 | 3D HNCA | 0.2mM [U-99% 13C; U-99% 15N] SH domain-2 | 90% H2O/10% D2O | 100 | 7 | AMBIENT | 298 | |
3 | 3D HNCO | 0.2mM [U-99% 13C; U-99% 15N] SH domain-2 | 90% H2O/10% D2O | 100 | 7 | AMBIENT | 298 | |
4 | 3D CBCA(CO)NH | 0.2mM [U-99% 13C; U-99% 15N] SH domain-2 | 90% H2O/10% D2O | 100 | 7 | AMBIENT | 298 | |
5 | 3D HBHA(CO)NH | 0.2mM [U-99% 13C; U-99% 15N] SH domain-2 | 90% H2O/10% D2O | 100 | 7 | AMBIENT | 298 | |
6 | 3D HCCH-TOCSY | 0.2mM [U-99% 13C; U-99% 15N] SH domain-2 | 90% H2O/10% D2O | 100 | 7 | AMBIENT | 298 | |
7 | 3D 1H-15N NOESY | 0.2mM [U-99% 15N] SH domain-1 | 90% H2O/10% D2O | 100 | 7 | AMBIENT | 298 | |
8 | 3D 1H-13C NOESY | 0.2mM [U-99% 13C; U-99% 15N] SH domain-2 | 90% H2O/10% D2O | 100 | 7 | AMBIENT | 298 | |
9 | 2D 1H-15N HSQC | 0.2mM [U-99% 15N] SH domain-1 | 90% H2O/10% D2O | 100 | 7 | AMBIENT | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Varian | INOVA | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.2.5 | Guntert, Mumenthaler and Wuthrich |
2 | refinement | CYANA | 2.2.5 | Guntert, Mumenthaler and Wuthrich |
3 | data analysis | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | chemical shift assignment | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
6 | chemical shift assignment | Sparky | Goddard | |
7 | peak picking | Sparky | Goddard | |
8 | structure analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
9 | structure analysis | PyMOL | DeLano Scientific LLC. | |
10 | peak picking | PyMOL | DeLano Scientific LLC. |