2K56
Bank Vole Prion Protein (121-231)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1 mM [U-99% 15N] Prion Protein, 10 % D2O, 90 % H2O, 10 mM [U-2H] sodium acetate | 90% H2O/10% D2O | 0.01 | 4.5 | ambient | 293.2 | |
2 | 3D 1H-13C NOESY | 1 mM [U-99% 13C; U-99% 15N] Prion Protein, 10 % D2O, 90 % H2O, 10 mM [U-2H] sodium acetate | 90% H2O/10% D2O | 0.01 | 4.5 | ambient | 293.2 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 750 |
2 | Bruker | AVANCE | 900 |
NMR Refinement | ||
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Method | Details | Software |
OPAL (water shell), TORSION ANGLE DYNAMICS, | OPAL |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | OPAL | 1.2 | Luginbuhl, Guntert, Billeter and Wuthrich |
2 | data analysis | CARA | 1.5.5 | Keller, R. |
3 | peak picking | ATNOS/CANDID | 1.2 | Herrmann, Guntert and Wuthrich |
4 | chemical shift assignment | ATNOS/CANDID | 1.2 | Herrmann, Guntert and Wuthrich |
5 | structure solution | DYANA | 1.0.3 | Guntert, Braun and Wuthrich |
6 | data analysis | MOLMOL | 2K.2 | Koradi, Billeter and Wuthrich |
7 | collection | XwinNMR | Bruker Biospin |