2JZ5

NMR solution structure of protein VPA0419 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR68

SOLUTION NMR

---

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419	90% H2O/10% D2O	100	5.5	ambient	298
2	2D 1H-13C HSQC	1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419	90% H2O/10% D2O	100	5.5	ambient	298
3	4,3 D GFT HNNACBCA	1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419	90% H2O/10% D2O	100	5.5	ambient	298
4	4,3 D GFT CABCACONHN	1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419	90% H2O/10% D2O	100	5.5	ambient	298
5	4,3D HABCABCONHN	1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419	90% H2O/10% D2O	100	5.5	ambient	298
6	4,3D GFT HCCH COSY	1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419	90% H2O/10% D2O	100	5.5	ambient	298
7	3D HCCH-COSY	1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419	90% H2O/10% D2O	100	5.5	ambient	298
8	3D SimNOESY	1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419	90% H2O/10% D2O	100	5.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	750
2	Varian	INOVA	600

NMR Refinement
Method	Details	Software
simulated annealing		AutoAssign

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	AutoAssign		Zimmerman, Moseley, Kulikowski and Montelione
2	chemical shift assignment	AutoStructure		Huang, Tejero, Powers and Montelione
3	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
4	refinement	CYANA		Guntert, Mumenthaler and Wuthrich
5	data processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6	validation	PSVS		Bhattacharya and Montelione
7	data analysis	TALOS		Cornilescu, Delaglio and Bax
8	data collection	VnmrJ		Varian