2JX2
Solution conformation of RNA-bound NELF-E RRM
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.4 mM [U-98% 13C; U-98% 15N] rna bound nelfe-rrm, 0.8 mM TAR(49-57) | 90% H2O/10% D2O | 6.9 | ambient | 298 | ||
2 | 2D 1H-13C HSQC | 0.4 mM [U-98% 13C; U-98% 15N] rna bound nelfe-rrm, 0.8 mM TAR(49-57) | 90% H2O/10% D2O | 6.9 | ambient | 298 | ||
3 | 3D HCCH-TOCSY | 0.4 mM [U-98% 13C; U-98% 15N] rna bound nelfe-rrm, 0.8 mM TAR(49-57) | 90% H2O/10% D2O | 6.9 | ambient | 298 | ||
4 | 3D 1H-15N NOESY | 0.4 mM [U-98% 13C; U-98% 15N] rna bound nelfe-rrm, 0.8 mM TAR(49-57) | 90% H2O/10% D2O | 6.9 | ambient | 298 | ||
5 | 3D 1H-13C NOESY | 0.4 mM [U-98% 13C; U-98% 15N] rna bound nelfe-rrm, 0.8 mM TAR(49-57) | 90% H2O/10% D2O | 6.9 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRView |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 160 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
2 | peak picking | NMRView | Johnson, One Moon Scientific | |
3 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |