2JV3

Ets-1 PNT domain (29-138) NMR structure ensemble


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate90% H2O/10% D2O206.2ambient303
22D 1H-13C HSQC200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate90% H2O/10% D2O206.2ambient303
33D CCC-TOCSY-NNH200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate90% H2O/10% D2O206.2ambient303
43D HCC-TOCSY-NNH200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate90% H2O/10% D2O206.2ambient303
53D HCCH-TOCSY200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate90% H2O/10% D2O206.2ambient303
6simultaneous 3D 15N-13C-NOESY200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate90% H2O/10% D2O206.2ambient303
7simultaneous 3D 15N-13C-NOESY (methyl)200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate90% H2O/10% D2O206.2ambient303
83D 1H-13C NOESY(aromatics)200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate90% H2O/10% D2O206.2ambient303
92D 1H-15N IPAP HSQC200-300 uM [U-100% 15N] EtsPnt, sodium phosphate, Pf1 phage90% H2O/10% D2O206.2ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
molecular dynamics, simulated annealing, MD/SA10000 steps @ 10000K, time step = 0.003fs, 10000K -> 1000 K in 5000 steps (first stage); 1000 K -> 50K in 4000 steps (second stage). Final 25 structures refined in Aria water box.ARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number25
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe structure was solved with a combination of NOESY and RDC data.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionARIA1.2Linge, O'Donoghue and Nilges
2structure solutionCNSBrunger, Adams, Clore, Gros, Nilges and Read
3refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
4processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5data analysisSparky3.11Goddard
6data analysisMOLMOL2K2Koradi, Billeter and Wuthrich
7data analysisTALOS2003.027.13.05Cornilescu, Delaglio and Bax
8structure solutionProcheckNMR3.5.4Laskowski and MacArthur
9data analysisProcheckNMR3.5.4Laskowski and MacArthur