2JTF
Solution Structure of the PHF20L1 MBT domain
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.89 mM [U-100% 13C; U-100% 15N] PHF20L1, 20 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.5 | ambient | 300 | ||
2 | 2D 1H-13C HSQC | 0.89 mM [U-100% 13C; U-100% 15N] PHF20L1, 20 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.5 | ambient | 300 | ||
3 | 3D CBCA(CO)NH | 0.89 mM [U-100% 13C; U-100% 15N] PHF20L1, 20 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.5 | ambient | 300 | ||
4 | 3D HNCACB | 0.89 mM [U-100% 13C; U-100% 15N] PHF20L1, 20 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.5 | ambient | 300 | ||
5 | 3D 1H-15N NOESY | 0.89 mM [U-100% 13C; U-100% 15N] PHF20L1, 20 mM potassium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 6.5 | ambient | 300 | ||
6 | 3D 1H-13C NOESY | 0.89 mM [U-100% 13C; U-100% 15N] PHF20L1, 20 mM potassium phosphate, 50 mM sodium chloride | 100% D2O | 6.5 | ambient | 300 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DMX | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, simulated annealing | in explicit water | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.6 | Bruker |
2 | chemical shift assignment | Sparky | Goddard | |
3 | chemical shift assignment | Analysis | 1.0.12 | Vranken, Boucher, Stevens, Fogh, Pajon, Llinas, Ulrich, Markley, Ionides and Laue |
4 | structure solution | X-PLOR NIH | 2.13 | Schwieters, Kuszewski, Tjandra and Clore |
5 | refinement | X-PLOR NIH | 2.13 | Schwieters, Kuszewski, Tjandra and Clore |