2JQD
Structure of the Leucine-Rich Repeat domain of LANP
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 0.5 mM [U-98% 15N] LANP LRR domain, 10 mM TRIS, 2 mM TCEP, 90 % H2O, 10 % [U-99% 2H] D2O, 0.02 % sodium azide | 90% H2O/10% D2O | 7.0 | ambient | 300 | ||
2 | 3D 1H-13C NOESY | 0.5 mM [U-98% 13C; U-98% 15N] LANP LRR domain, 10 mM TRIS, 2 mM TCEP, 90 % H2O, 10 % [U-99% 2H] D2O, 0.02 % sodium azide | 90% H2O/10% D2O | 7.0 | ambient | 300 | ||
3 | 2D J-modulated 1H-15N HSQC | 0.5 mM [U-98% 15N] LANP LRR domain, 10 mM TRIS, 2 mM TCEP, 90 % H2O, 10 % [U-99% 2H] D2O, 0.02 % sodium azide | 90% H2O/10% D2O | 7.0 | ambient | 300 | ||
4 | 2D J-modulated 1H-15N HSQC | 0.5 mM [U-98% 15N] LANP LRR domain, 10 mM TRIS, 2 mM TCEP, 90 % H2O, 10 % [U-99% 2H] D2O, 0.02 % sodium azide | 90% H2O/10% D2O | 7.0 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Bruker | AVANCE | 600 |
3 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | water refinement | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (regularity of secondary sturctures) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | data analysis | XEASY | Bartels et al. | |
5 | chemical shift assignment | XEASY | Bartels et al. | |
6 | peak picking | XEASY | Bartels et al. | |
7 | structure solution | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
8 | refinement | ARIA | 1.2 | Linge, O'Donoghue and Nilges |