2JN5
Solution Structure of a Dodecapeptide from Alpha-Synuclein Bound with Synphilin-1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1 mM entity, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 mM Synphilin-1 | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
2 | 2D 1H-1H NOESY | 1 mM entity, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 mM Synphilin-1 | 90% H2O/10% D2O | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | NMRDraw |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 250 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRDraw | 2.3 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
2 | peak picking | Sparky | 3.110 | Goddard |
3 | chemical shift assignment | Sparky | 3.110 | Goddard |
4 | data analysis | ARIA | 2.0 | Linge, O'Donoghue and Nilges |
5 | structure solution | ARIA | 2.0 | Linge, O'Donoghue and Nilges |
6 | refinement | ARIA | 2.0 | Linge, O'Donoghue and Nilges |