2JMF

Solution structure of the Su(dx) WW4- Notch PY peptide complex


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
22D 1H-15N HSQC3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
33D HNCO0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
43D HNCO3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
53D HNCA0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
63D HNCA3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
73D HNCACB0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
83D HNCACB3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
93D HN(CO)CA0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
103D HN(CO)CA3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
113D HCCH-TOCSY0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
123D HCCH-TOCSY3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
133D 1H-15N NOESY0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
143D 1H-15N NOESY3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
153D 1H-15N TOCSY0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
163D 1H-15N TOCSY3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
173D 1H-13C NOESY0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
183D 1H-13C NOESY3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
192D 1H-13C HSQC0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
202D 1H-13C HSQC3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O90% H2O/10% D2O6.75ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAMX600
NMR Refinement
MethodDetailsSoftware
simulated annealingenergy minimisation performed using AMBERNMRPipe
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number20
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2structure solutionCARAKeller and Wuthrich
3structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich
4refinementCYANA2.1Guntert, Mumenthaler and Wuthrich
5structure solutionNMRViewJohnson
6refinementAmberCase, Darden, Cheatham, Simmerling, Wang, Duke