2IWW

Structure of the monomeric outer membrane porin OmpG in the open and closed conformation


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.6100 MM NA-CITRATE PH 5.6 150 MM NACL 12% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
3.464

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.38α = 90
b = 71.14β = 90
c = 191.61γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-10-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.42092.70.19.95.31889831.75

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT2.719.872548713421000.2480.2450.301RANDOM48.73
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.2-2.044.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.515
r_dihedral_angle_3_deg19.389
r_dihedral_angle_4_deg18.537
r_dihedral_angle_1_deg11.893
r_scangle_it4.455
r_mcangle_it3.718
r_scbond_it3.384
r_mcbond_it2.896
r_angle_refined_deg1.836
r_angle_other_deg0.956
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.515
r_dihedral_angle_3_deg19.389
r_dihedral_angle_4_deg18.537
r_dihedral_angle_1_deg11.893
r_scangle_it4.455
r_mcangle_it3.718
r_scbond_it3.384
r_mcbond_it2.896
r_angle_refined_deg1.836
r_angle_other_deg0.956
r_symmetry_hbond_refined0.271
r_nbd_refined0.236
r_symmetry_vdw_other0.22
r_nbd_other0.218
r_nbtor_refined0.212
r_xyhbond_nbd_refined0.185
r_symmetry_vdw_refined0.157
r_nbtor_other0.101
r_chiral_restr0.098
r_bond_refined_d0.016
r_bond_other_d0.006
r_gen_planes_refined0.005
r_gen_planes_other0.002
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4596
Nucleic Acid Atoms
Solvent Atoms37
Heterogen Atoms304

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling