2IL2

Crystal Structure of Human Renin Complexed with Inhibitor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.529810-20 % PEG 3350, 50 mM sodium citrate pH 4.5, 0.6 M NaCl., VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.1761.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 141.533α = 90
b = 141.533β = 90
c = 141.533γ = 90
Symmetry
Space GroupP 21 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102004-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.00APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.245099.30.07311.47.345325
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.242.3294.10.6270.6273.286.84278

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2IKO2.242045166228199.680.2080.2060.242RANDOM38.97
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.472
r_dihedral_angle_4_deg20.333
r_dihedral_angle_3_deg16.16
r_dihedral_angle_1_deg7.584
r_scangle_it2.325
r_scbond_it1.585
r_angle_refined_deg1.411
r_mcangle_it1.003
r_angle_other_deg0.884
r_mcbond_it0.846
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.472
r_dihedral_angle_4_deg20.333
r_dihedral_angle_3_deg16.16
r_dihedral_angle_1_deg7.584
r_scangle_it2.325
r_scbond_it1.585
r_angle_refined_deg1.411
r_mcangle_it1.003
r_angle_other_deg0.884
r_mcbond_it0.846
r_symmetry_vdw_other0.295
r_symmetry_vdw_refined0.274
r_nbd_refined0.191
r_nbd_other0.188
r_nbtor_refined0.18
r_symmetry_hbond_refined0.177
r_xyhbond_nbd_refined0.129
r_mcbond_other0.119
r_nbtor_other0.086
r_chiral_restr0.085
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5212
Nucleic Acid Atoms
Solvent Atoms242
Heterogen Atoms101

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
MOLREPphasing