X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5291PEG 3350, NaCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.2745.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 142.479α = 90
b = 142.479β = 90
c = 37.42γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102005-11-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.116ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.92098.56.81.9300673006725
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.9298.70.641.61.74230

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 2gkg1.9203006730067151898.50.221670.219910.25369RANDOM25.04
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.170.17-0.33
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.555
r_dihedral_angle_4_deg20.105
r_dihedral_angle_3_deg10.971
r_dihedral_angle_1_deg4.807
r_angle_refined_deg0.826
r_scangle_it0.674
r_angle_other_deg0.671
r_scbond_it0.414
r_mcangle_it0.316
r_mcbond_it0.185
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.555
r_dihedral_angle_4_deg20.105
r_dihedral_angle_3_deg10.971
r_dihedral_angle_1_deg4.807
r_angle_refined_deg0.826
r_scangle_it0.674
r_angle_other_deg0.671
r_scbond_it0.414
r_mcangle_it0.316
r_mcbond_it0.185
r_nbd_refined0.179
r_nbtor_refined0.152
r_nbd_other0.148
r_symmetry_vdw_other0.136
r_symmetry_hbond_refined0.103
r_xyhbond_nbd_refined0.102
r_symmetry_vdw_refined0.091
r_nbtor_other0.075
r_chiral_restr0.048
r_mcbond_other0.025
r_bond_refined_d0.005
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2666
Nucleic Acid Atoms
Solvent Atoms266
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
MOSFLMdata reduction
CCP4data scaling
EPMRphasing