X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP829330% PEG400 0.1M Tris-HCl, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2545.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.261α = 90
b = 54.705β = 99.91
c = 66.509γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2006-03-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D0.9795APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.15097.80.0530.05319.253.393127
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.11.486.20.3180.3182.882.38153

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2G8C1.1208842088420466997.80.155530.155530.154710.17149RANDOM9.823
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.09-0.020.43-0.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.329
r_dihedral_angle_3_deg10.524
r_dihedral_angle_4_deg8.389
r_dihedral_angle_1_deg5.716
r_sphericity_free4.133
r_scangle_it3.09
r_scbond_it2.27
r_sphericity_bonded1.897
r_mcangle_it1.55
r_mcbond_it1.282
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.329
r_dihedral_angle_3_deg10.524
r_dihedral_angle_4_deg8.389
r_dihedral_angle_1_deg5.716
r_sphericity_free4.133
r_scangle_it3.09
r_scbond_it2.27
r_sphericity_bonded1.897
r_mcangle_it1.55
r_mcbond_it1.282
r_angle_refined_deg1.281
r_rigid_bond_restr1.026
r_angle_other_deg0.701
r_mcbond_other0.348
r_nbd_refined0.199
r_nbd_other0.18
r_nbtor_refined0.154
r_symmetry_vdw_other0.136
r_xyhbond_nbd_refined0.096
r_symmetry_vdw_refined0.087
r_nbtor_other0.083
r_chiral_restr0.076
r_symmetry_hbond_refined0.071
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1877
Nucleic Acid Atoms
Solvent Atoms378
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing