2HLV

Bovine Odorant Binding Protein deswapped triple mutant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529826% (W/V) PEG 8000, 200 mM Ammonium Sulfate and 10 mM Na Acetate (pH 4.8), protein at 7.5 mg/ml, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3146.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.501α = 90
b = 83.501β = 90
c = 48.964γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42003-06-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.933ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.655799.90.0895.22129021290
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.799.80.28220

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1G851.65302126020168109199.880.185890.185890.184510.21224RANDOM17.493
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.89-0.891.78
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.411
r_dihedral_angle_4_deg17.919
r_dihedral_angle_3_deg14.954
r_dihedral_angle_1_deg5.871
r_scangle_it3.596
r_scbond_it2.875
r_mcangle_it1.662
r_mcbond_it1.57
r_angle_refined_deg1.317
r_angle_other_deg0.785
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.411
r_dihedral_angle_4_deg17.919
r_dihedral_angle_3_deg14.954
r_dihedral_angle_1_deg5.871
r_scangle_it3.596
r_scbond_it2.875
r_mcangle_it1.662
r_mcbond_it1.57
r_angle_refined_deg1.317
r_angle_other_deg0.785
r_xyhbond_nbd_other0.319
r_symmetry_vdw_refined0.228
r_symmetry_vdw_other0.218
r_mcbond_other0.215
r_symmetry_hbond_refined0.211
r_nbd_other0.21
r_nbd_refined0.203
r_nbtor_refined0.171
r_xyhbond_nbd_refined0.169
r_chiral_restr0.1
r_nbtor_other0.082
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1205
Nucleic Acid Atoms
Solvent Atoms131
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALAdata scaling
AMoREphasing