Experiment: 2HDA

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	9	288	1.6 M ammonium sulphate, 0.1 M bicine, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 15K, temperature 288K

Crystal Properties
Matthews coefficient	Solvent content
1.99	38.19

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 46.009	α = 90
b = 46.009	β = 90
c = 90.431	γ = 120

Symmetry
Space Group	P 63 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	BRUKER SMART 6500	Montel optics	2006-01-30	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	BRUKER AXS MICROSTAR	1.54

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.81	50	99.3	0.0469	0.025	28.37	10.08		5626			20.3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.81	1.95	97.5		0.238	0.1825	5.19	4.19	1058

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1FYN	1.9	14.86	4663	4655	218	99.82	0.22	0.21619	0.21391	0.26969	RANDOM	20.79

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.03	-0.01		-0.03		0.04

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.104
r_dihedral_angle_3_deg	15.826
r_dihedral_angle_1_deg	10.733
r_dihedral_angle_4_deg	10.228
r_scangle_it	5.235
r_mcangle_it	4.169
r_scbond_it	3.836
r_mcbond_it	2.971
r_angle_refined_deg	2.065
r_nbtor_refined	0.321

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.104
r_dihedral_angle_3_deg	15.826
r_dihedral_angle_1_deg	10.733
r_dihedral_angle_4_deg	10.228
r_scangle_it	5.235
r_mcangle_it	4.169
r_scbond_it	3.836
r_mcbond_it	2.971
r_angle_refined_deg	2.065
r_nbtor_refined	0.321
r_xyhbond_nbd_refined	0.251
r_symmetry_hbond_refined	0.248
r_symmetry_vdw_refined	0.245
r_nbd_refined	0.228
r_chiral_restr	0.148
r_gen_planes_refined	0.013
r_bond_refined_d	0.011

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	473
Nucleic Acid Atoms
Solvent Atoms	41
Heterogen Atoms	5

Software

Software
Software Name	Purpose
REFMAC	refinement
MOLREP	phasing

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.