2GSZ

Structure of A. aeolicus PilT with 6 monomers per asymmetric unit


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.6293Upon set up, protein droplet contains 7.5 mg/ml protein in 9.7% PEG1000, 13.0 mM TCEP, 13.0 mM LiCl, 0.32 M AmSO4, 2.6 mM ADP, 16 mM Tris pH 7.6, 98 mM KCl, 130 mM Imidazole, 6.5% glycerol. Well contains 0.2 M AmSO4, 10% PEG 1000, unbuffered., VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5150.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 206.111α = 90
b = 105.244β = 111.06
c = 123.023γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2004-08-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-ID-B0.97896APS14-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
14.25095.20.08915.65.717281
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
4.24.3596.60.2765.35.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTNTD of mol C and CTD of mol D from 2EWV.pdb4.225182471624385994.790.346340.343070.40563RANDOM124.351
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-6.13-7.32-0.191.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.956
r_dihedral_angle_3_deg25.761
r_dihedral_angle_4_deg21.938
r_dihedral_angle_1_deg7.746
r_angle_refined_deg1.732
r_scangle_it1.392
r_mcangle_it0.881
r_scbond_it0.845
r_symmetry_hbond_refined0.677
r_symmetry_vdw_refined0.608
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.956
r_dihedral_angle_3_deg25.761
r_dihedral_angle_4_deg21.938
r_dihedral_angle_1_deg7.746
r_angle_refined_deg1.732
r_scangle_it1.392
r_mcangle_it0.881
r_scbond_it0.845
r_symmetry_hbond_refined0.677
r_symmetry_vdw_refined0.608
r_mcbond_it0.526
r_nbtor_refined0.322
r_nbd_refined0.278
r_xyhbond_nbd_refined0.203
r_chiral_restr0.099
r_bond_refined_d0.019
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms16302
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms42

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection