2GIX

Cytoplasmic Domain Structure of Kir2.1 containing Andersen's Mutation R218Q and Rescue Mutation T309K


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.227735% MPD, 0.1 NaPO4/KPO4, 50mM NaCl, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.754.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 140.674α = 90
b = 98.876β = 130.68
c = 98.094γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102005-10-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.11.000ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.025099.60.0868.83.66647166107
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.022.0999.4597.10.3472.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTCytoplasmic Domains of Kir2.12.026647166106336399.450.1910.1770.229RANDOM27.865
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.911.13-0.60.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.617
r_dihedral_angle_4_deg22.591
r_dihedral_angle_3_deg15.599
r_dihedral_angle_1_deg6.958
r_scangle_it4.675
r_scbond_it3.072
r_mcangle_it2.066
r_angle_refined_deg1.656
r_mcbond_it1.112
r_nbtor_refined0.312
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.617
r_dihedral_angle_4_deg22.591
r_dihedral_angle_3_deg15.599
r_dihedral_angle_1_deg6.958
r_scangle_it4.675
r_scbond_it3.072
r_mcangle_it2.066
r_angle_refined_deg1.656
r_mcbond_it1.112
r_nbtor_refined0.312
r_symmetry_hbond_refined0.245
r_symmetry_vdw_refined0.241
r_nbd_refined0.208
r_xyhbond_nbd_refined0.179
r_chiral_restr0.118
r_metal_ion_refined0.112
r_bond_refined_d0.018
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6570
Nucleic Acid Atoms
Solvent Atoms732
Heterogen Atoms1

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection