X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP, NANODROP427718.0% PEG-6000, 0.5M LiCl, 0.1M Citrate, pH 4.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.2344.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.03α = 90
b = 74.69β = 90
c = 188.13γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152005-12-16MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.20.9797, 1.0000ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1229.2493.10.0479.243479941.346
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.122.2690.2822.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.1229.2534797175297.730.2270.2250.274RANDOM44.217
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.370.65-0.28
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.961
r_dihedral_angle_4_deg15.102
r_dihedral_angle_3_deg10.921
r_dihedral_angle_1_deg5.013
r_scangle_it3.7
r_scbond_it2.388
r_mcangle_it1.667
r_mcbond_it0.867
r_angle_refined_deg0.782
r_angle_other_deg0.63
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.961
r_dihedral_angle_4_deg15.102
r_dihedral_angle_3_deg10.921
r_dihedral_angle_1_deg5.013
r_scangle_it3.7
r_scbond_it2.388
r_mcangle_it1.667
r_mcbond_it0.867
r_angle_refined_deg0.782
r_angle_other_deg0.63
r_symmetry_vdw_refined0.165
r_nbd_refined0.159
r_nbtor_refined0.155
r_nbd_other0.149
r_mcbond_other0.137
r_metal_ion_refined0.11
r_symmetry_hbond_refined0.107
r_symmetry_vdw_other0.1
r_xyhbond_nbd_refined0.092
r_nbtor_other0.075
r_chiral_restr0.063
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4479
Nucleic Acid Atoms
Solvent Atoms259
Heterogen Atoms83

Software

Software
Software NamePurpose
REFMACrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
SHARPphasing