2G4A
Solution structure of a Bromodomain from RING3 protein
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 0.5-1.0mM 15N, 13C-labeled RING3 Bromodomain, 50mM phosphate buffer (pH 5.8), 50mM NaCl, 1mM DTT, 1mM EDTA | 99.96% D2O | 5.8 | 1 atm | 298 | ||
2 | 3D_15N-separated_NOESY | 0.5-1.0mM 15N, 13C-labeled RING3 Bromodomain, 50mM phosphate buffer (pH 5.8), 50mM NaCl, 1mM DTT, 1mM EDTA | 90% H2O/10% D2O | 5.8 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry simulated annealing molecular dynamics torsion angle dynamics | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 21 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2.2 | F.Delaglio |
2 | data analysis | Sparky | 3 | T.D.Goddard and D.G.Kneller |
3 | structure solution | CNS | 1.1 | |
4 | data analysis | CSI | 1.0 | David S. Wishart |
5 | data analysis | MOLMOL | 2K.2 | Koradi |
6 | refinement | CNS | 1.1 |