2FKJ

The crystal structure of engineered OspA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.329322% PEG1000, 0.1M Acetate, 0.2M litium sulfate, 3% MPD, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.8456.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.15α = 90
b = 105.5β = 93.24
c = 88.981γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42005-06-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.00APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.15098.90.06124.174.92430524305
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.13.211000.14710.1952426

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.1202382922668116198.520.248660.248660.246970.28162RANDOM79.512
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.136.756.75-3.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.885
r_dihedral_angle_3_deg17.951
r_dihedral_angle_4_deg11.549
r_dihedral_angle_1_deg5.562
r_scangle_it1.137
r_angle_refined_deg1.102
r_scbond_it0.614
r_mcangle_it0.439
r_mcbond_it0.23
r_symmetry_vdw_refined0.202
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.885
r_dihedral_angle_3_deg17.951
r_dihedral_angle_4_deg11.549
r_dihedral_angle_1_deg5.562
r_scangle_it1.137
r_angle_refined_deg1.102
r_scbond_it0.614
r_mcangle_it0.439
r_mcbond_it0.23
r_symmetry_vdw_refined0.202
r_nbd_refined0.201
r_xyhbond_nbd_refined0.132
r_symmetry_hbond_refined0.068
r_chiral_restr0.067
r_bond_refined_d0.007
r_gen_planes_refined0.002
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8334
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing