X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529385 mM Tris-HCl, 0.17 M sodium acetate, 25% PEG 4000, 15% glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2344.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.82α = 90
b = 81.2β = 90
c = 108.17γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDtoroidal focussing mirror2004-07-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM140.953718, 1.77122ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.719.53799.90.0641.628.96150061500
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.81000.27915.329.39594

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.719.5376149930751000.1670.1650.208RANDOM23.37
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.070.89-0.82
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.815
r_scangle_it3.027
r_scbond_it2.015
r_angle_refined_deg1.933
r_sphericity_free1.897
r_sphericity_bonded1.797
r_mcangle_it1.484
r_rigid_bond_restr0.986
r_mcbond_it0.889
r_nbd_refined0.243
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.815
r_scangle_it3.027
r_scbond_it2.015
r_angle_refined_deg1.933
r_sphericity_free1.897
r_sphericity_bonded1.797
r_mcangle_it1.484
r_rigid_bond_restr0.986
r_mcbond_it0.889
r_nbd_refined0.243
r_symmetry_vdw_refined0.223
r_symmetry_hbond_refined0.212
r_xyhbond_nbd_refined0.181
r_chiral_restr0.078
r_bond_refined_d0.02
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4124
Nucleic Acid Atoms
Solvent Atoms897
Heterogen Atoms101

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
SCALEdata reduction
XDSdata scaling
SHARPphasing